Download Cellular Computing (Genomics and Bioinformatics) by Martyn Amos PDF

By Martyn Amos

Desk of contents

Part I: Theoretical and Engineering rules

1. An advent to mobile Computing
Martyn Amos and Gerald Owenson

2. Proteins and knowledge Processing
Ray Paton, Michael Fisher, supply Malcolm and Koichiro Matsuno

3. Enzyme Genetic Programming
Michael Lones and Andy Tyrell

4. Genetic procedure Engineering
Ron Weiss, Thomas F. Knight Jr. and Gerald Sussman

5. The machine technological know-how of entire Cells as elements in Microscale and Nanoscale structures
Michael L. Simpson, Gary S. Sayler, et al.

Part II: Laboratory Experiments

6. The Enterococcus faecilis info Gate
Kenichi Wakabayashi and Masayuki Yamamura

7. mobile Computation and conversation utilizing Engineered Genetic Regulatory Networks
Ron Weiss, Thomas F. Knight Jr. and Gerald Sussman

8. The Biology of Integration of Cells in Microscale and Nanoscale structures
Michael L. Simpson, Timothy E. McKnight, et al.

Part III: Computation in Ciliates

9. Encrypted Genes and Their meeting in Ciliates
David M. Prescott and Grzegorz Rozenberg

10. Biocomputation in Ciliates
Lila Kari and Laura F. Landweber

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Extra info for Cellular Computing (Genomics and Bioinformatics)

Example text

Given that the hard constraints are met, the aim of development is then to satisfy the input preferences of each enzyme of the executional structure; so that a component’s actual input sources are as close as possible to the preferred input sources described by its specificities. 5 Development of a logic circuit from a simple genotype. The output terminal receptor binds an AND1 enzyme as its substrate. The AND1 enzyme now chooses its own substrates, and the process continues until the inputs of all expressed enzymes have been satisfied.

MIT Press, Cambridge, 1996. R. Poli. Evolution of graph-like programs with parallel distributed genetic programming. In E. Goodman, editor, Proceedings of Seventh International Conference on Genetic Algorithms, pages 346–353. Morgan Kaufmann, San Francisco, CA, 1997. I. Rechenberg. Evolutionstrategie: Optimierung Technisher Systeme nach Prinzipien der Biologischen Evolution. Frommann-Hoolzboog Verlag, 1973. V. Reddy, M. Mavrovouniotis, and M. Liebman. Petri net representations in metabolic pathways.

Paton, editors, Proceedings of the International Conference on Information Processing in Cells and Tissues (IPCAT), pages 261– 272. Plenum Press, New York, 1997. T. Soule, J. A. Foster, and J. Dickinson. Code growth in genetic programming. In J. R. Koza, editor, Genetic Programming 1996: Proceedings of the First Annual Conference, pages 215–213. MIT Press, Cambridge, 1996. W. A. Tackett. Recombination, Selection, and the Genetic Construction of Computer Programs. PhD thesis, University of Southern California, 1994.

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